Gallery#
Here’s a list of examples on how to use paidiverpy. We will be adding more examples soon. Contributions are highly welcomed and appreciated. So, if you are interested in contributing, please consult the Contributing to paidiverpy guide.
Notebook Examples#
🏊
A notebook to show how to open and parse configuration and metadata files
🏊
An example to processing images without a proper pipeline
🏊
A notebook to show how to run an entire pipeline described in a configuration file
🚣
Investigate the output of a pipeline in test mode
🏄
Generate the pipeline without a describing the steps in the config file
🏄
Rerun pipeline steps with modified configurations
🏄
A notebook to show how to run an entire pipeline with parallelisation using Dask
🏊
An example to processing a real dataset with IFDO metadata
🏄
A notebook to show how to add a custom algorithm to the pipeline
🏄
A notebook to show how to use remote data in the pipeline
🏄
A notebook to show how to create a LocalCluster with Dask and run an entire pipeline with parallelisation using Dask
🏄
A notebook to show how to handle, open and process raw images
🏊
A notebook to show how to export and validate metadata
Notebook tags Legend
- User mode:
🏄 : expert, 🏊 : standard, 🚣 : research